1 files changed, 155 insertions, 155 deletions

diff --git a/builtin/merge.c b/builtin/merge.c
index 5900b81729..e4bd65eeba 100644
--- a/builtin/merge.c
+++ b/builtin/merge.c
@@ -6,11 +6,16 @@
  * Based on git-merge.sh by Junio C Hamano.
  */
 
-#define USE_THE_INDEX_COMPATIBILITY_MACROS
-#include "cache.h"
+#include "builtin.h"
+#include "abspath.h"
+#include "advice.h"
 #include "config.h"
+#include "editor.h"
+#include "environment.h"
+#include "gettext.h"
+#include "hex.h"
+#include "object-name.h"
 #include "parse-options.h"
-#include "builtin.h"
 #include "lockfile.h"
 #include "run-command.h"
 #include "hook.h"
@@ -20,24 +25,22 @@
 #include "refspec.h"
 #include "commit.h"
 #include "diffcore.h"
+#include "path.h"
 #include "revision.h"
 #include "unpack-trees.h"
 #include "cache-tree.h"
 #include "dir.h"
-#include "utf8.h"
-#include "log-tree.h"
 #include "color.h"
 #include "rerere.h"
 #include "help.h"
+#include "merge.h"
 #include "merge-recursive.h"
 #include "merge-ort-wrappers.h"
 #include "resolve-undo.h"
 #include "remote.h"
 #include "fmt-merge-msg.h"
-#include "gpg-interface.h"
 #include "sequencer.h"
 #include "string-list.h"
-#include "packfile.h"
 #include "tag.h"
 #include "alias.h"
 #include "branch.h"
@@ -71,8 +74,7 @@ static int overwrite_ignore = 1;
 static struct strbuf merge_msg = STRBUF_INIT;
 static struct strategy **use_strategies;
 static size_t use_strategies_nr, use_strategies_alloc;
-static const char **xopts;
-static size_t xopts_nr, xopts_alloc;
+static struct strvec xopts = STRVEC_INIT;
 static const char *branch;
 static char *branch_mergeoptions;
 static int verbosity;
@@ -188,9 +190,8 @@ static struct strategy *get_strategy(const char *name)
 		for (i = 0; i < main_cmds.cnt; i++) {
 			int j, found = 0;
 			struct cmdname *ent = main_cmds.names[i];
-			for (j = 0; j < ARRAY_SIZE(all_strategy); j++)
-				if (!strncmp(ent->name, all_strategy[j].name, ent->len)
-						&& !all_strategy[j].name[ent->len])
+			for (j = 0; !found && j < ARRAY_SIZE(all_strategy); j++)
+				if (!xstrncmpz(all_strategy[j].name, ent->name, ent->len))
 					found = 1;
 			if (!found)
 				add_cmdname(&not_strategies, ent->name, ent->len);
@@ -224,7 +225,7 @@ static void append_strategy(struct strategy *s)
 	use_strategies[use_strategies_nr++] = s;
 }
 
-static int option_parse_strategy(const struct option *opt,
+static int option_parse_strategy(const struct option *opt UNUSED,
 				 const char *name, int unset)
 {
 	if (unset)
@@ -234,29 +235,9 @@ static int option_parse_strategy(const struct option *opt,
 	return 0;
 }
 
-static int option_parse_x(const struct option *opt,
-			  const char *arg, int unset)
-{
-	if (unset)
-		return 0;
-
-	ALLOC_GROW(xopts, xopts_nr + 1, xopts_alloc);
-	xopts[xopts_nr++] = xstrdup(arg);
-	return 0;
-}
-
-static int option_parse_n(const struct option *opt,
-			  const char *arg, int unset)
-{
-	BUG_ON_OPT_ARG(arg);
-	show_diffstat = unset;
-	return 0;
-}
-
 static struct option builtin_merge_options[] = {
-	OPT_CALLBACK_F('n', NULL, NULL, NULL,
-		N_("do not show a diffstat at the end of the merge"),
-		PARSE_OPT_NOARG, option_parse_n),
+	OPT_SET_INT('n', NULL, &show_diffstat,
+		N_("do not show a diffstat at the end of the merge"), 0),
 	OPT_BOOL(0, "stat", &show_diffstat,
 		N_("show a diffstat at the end of the merge")),
 	OPT_BOOL(0, "summary", &show_diffstat, N_("(synonym to --stat)")),
@@ -277,10 +258,10 @@ static struct option builtin_merge_options[] = {
 	OPT_RERERE_AUTOUPDATE(&allow_rerere_auto),
 	OPT_BOOL(0, "verify-signatures", &verify_signatures,
 		N_("verify that the named commit has a valid GPG signature")),
-	OPT_CALLBACK('s', "strategy", &use_strategies, N_("strategy"),
+	OPT_CALLBACK('s', "strategy", NULL, N_("strategy"),
 		N_("merge strategy to use"), option_parse_strategy),
-	OPT_CALLBACK('X', "strategy-option", &xopts, N_("option=value"),
-		N_("option for selected merge strategy"), option_parse_x),
+	OPT_STRVEC('X', "strategy-option", &xopts, N_("option=value"),
+		N_("option for selected merge strategy")),
 	OPT_CALLBACK('m', "message", &merge_msg, N_("message"),
 		N_("merge commit message (for a non-fast-forward merge)"),
 		option_parse_message),
@@ -318,7 +299,7 @@ static int save_state(struct object_id *stash)
 	int rc = -1;
 
 	fd = repo_hold_locked_index(the_repository, &lock_file, 0);
-	refresh_cache(REFRESH_QUIET);
+	refresh_index(the_repository->index, REFRESH_QUIET, NULL, NULL, NULL);
 	if (0 <= fd)
 		repo_update_index_if_able(the_repository, &lock_file);
 	rollback_lock_file(&lock_file);
@@ -337,7 +318,7 @@ static int save_state(struct object_id *stash)
 	else if (!len)		/* no changes */
 		goto out;
 	strbuf_setlen(&buffer, buffer.len-1);
-	if (get_oid(buffer.buf, stash))
+	if (repo_get_oid(the_repository, buffer.buf, stash))
 		die(_("not a valid object: %s"), buffer.buf);
 	rc = 0;
 out:
@@ -345,63 +326,53 @@ out:
 	return rc;
 }
 
-static void read_empty(const struct object_id *oid, int verbose)
+static void read_empty(const struct object_id *oid)
 {
-	int i = 0;
-	const char *args[7];
-
-	args[i++] = "read-tree";
-	if (verbose)
-		args[i++] = "-v";
-	args[i++] = "-m";
-	args[i++] = "-u";
-	args[i++] = empty_tree_oid_hex();
-	args[i++] = oid_to_hex(oid);
-	args[i] = NULL;
+	struct child_process cmd = CHILD_PROCESS_INIT;
 
-	if (run_command_v_opt(args, RUN_GIT_CMD))
+	strvec_pushl(&cmd.args, "read-tree", "-m", "-u", empty_tree_oid_hex(),
+		     oid_to_hex(oid), NULL);
+	cmd.git_cmd = 1;
+
+	if (run_command(&cmd))
 		die(_("read-tree failed"));
 }
 
-static void reset_hard(const struct object_id *oid, int verbose)
+static void reset_hard(const struct object_id *oid)
 {
-	int i = 0;
-	const char *args[6];
-
-	args[i++] = "read-tree";
-	if (verbose)
-		args[i++] = "-v";
-	args[i++] = "--reset";
-	args[i++] = "-u";
-	args[i++] = oid_to_hex(oid);
-	args[i] = NULL;
+	struct child_process cmd = CHILD_PROCESS_INIT;
 
-	if (run_command_v_opt(args, RUN_GIT_CMD))
+	strvec_pushl(&cmd.args, "read-tree", "-v", "--reset", "-u",
+		     oid_to_hex(oid), NULL);
+	cmd.git_cmd = 1;
+
+	if (run_command(&cmd))
 		die(_("read-tree failed"));
 }
 
 static void restore_state(const struct object_id *head,
 			  const struct object_id *stash)
 {
-	struct strvec args = STRVEC_INIT;
+	struct child_process cmd = CHILD_PROCESS_INIT;
 
-	reset_hard(head, 1);
+	reset_hard(head);
 
 	if (is_null_oid(stash))
 		goto refresh_cache;
 
-	strvec_pushl(&args, "stash", "apply", "--index", "--quiet", NULL);
-	strvec_push(&args, oid_to_hex(stash));
+	strvec_pushl(&cmd.args, "stash", "apply", "--index", "--quiet", NULL);
+	strvec_push(&cmd.args, oid_to_hex(stash));
 
 	/*
 	 * It is OK to ignore error here, for example when there was
 	 * nothing to restore.
 	 */
-	run_command_v_opt(args.v, RUN_GIT_CMD);
-	strvec_clear(&args);
+	cmd.git_cmd = 1;
+	run_command(&cmd);
 
 refresh_cache:
-	if (discard_cache() < 0 || read_cache() < 0)
+	discard_index(the_repository->index);
+	if (repo_read_index(the_repository) < 0)
 		die(_("could not read index"));
 }
 
@@ -477,8 +448,10 @@ static void finish(struct commit *head_commit,
 		if (verbosity >= 0 && !merge_msg.len)
 			printf(_("No merge message -- not updating HEAD\n"));
 		else {
-			update_ref(reflog_message.buf, "HEAD", new_head, head,
-				   0, UPDATE_REFS_DIE_ON_ERR);
+			refs_update_ref(get_main_ref_store(the_repository),
+					reflog_message.buf, "HEAD", new_head,
+					head,
+					0, UPDATE_REFS_DIE_ON_ERR);
 			/*
 			 * We ignore errors in 'gc --auto', since the
 			 * user should see them.
@@ -489,8 +462,7 @@ static void finish(struct commit *head_commit,
 	if (new_head && show_diffstat) {
 		struct diff_options opts;
 		repo_diff_setup(the_repository, &opts);
-		opts.stat_width = -1; /* use full terminal width */
-		opts.stat_graph_width = -1; /* respect statGraphWidth config */
+		init_diffstat_widths(&opts);
 		opts.output_format |=
 			DIFF_FORMAT_SUMMARY | DIFF_FORMAT_DIFFSTAT;
 		opts.detect_rename = DIFF_DETECT_RENAME;
@@ -504,7 +476,7 @@ static void finish(struct commit *head_commit,
 	run_hooks_l("post-merge", squash ? "1" : "0", NULL);
 
 	if (new_head)
-		apply_autostash(git_path_merge_autostash(the_repository));
+		apply_autostash_ref(the_repository, "MERGE_AUTOSTASH");
 	strbuf_release(&reflog_message);
 }
 
@@ -527,7 +499,8 @@ static void merge_name(const char *remote, struct strbuf *msg)
 	if (!remote_head)
 		die(_("'%s' does not point to a commit"), remote);
 
-	if (dwim_ref(remote, strlen(remote), &branch_head, &found_ref, 0) > 0) {
+	if (repo_dwim_ref(the_repository, remote, strlen(remote), &branch_head,
+			  &found_ref, 0) > 0) {
 		if (starts_with(found_ref, "refs/heads/")) {
 			strbuf_addf(msg, "%s\t\tbranch '%s' of .\n",
 				    oid_to_hex(&branch_head), remote);
@@ -575,7 +548,7 @@ static void merge_name(const char *remote, struct strbuf *msg)
 		struct strbuf truname = STRBUF_INIT;
 		strbuf_addf(&truname, "refs/heads/%s", remote);
 		strbuf_setlen(&truname, truname.len - len);
-		if (ref_exists(truname.buf)) {
+		if (refs_ref_exists(get_main_ref_store(the_repository), truname.buf)) {
 			strbuf_addf(msg,
 				    "%s\t\tbranch '%s'%s of .\n",
 				    oid_to_hex(&remote_head->object.oid),
@@ -623,7 +596,8 @@ static void parse_branch_merge_options(char *bmo)
 	free(argv);
 }
 
-static int git_merge_config(const char *k, const char *v, void *cb)
+static int git_merge_config(const char *k, const char *v,
+			    const struct config_context *ctx, void *cb)
 {
 	int status;
 	const char *str;
@@ -668,13 +642,10 @@ static int git_merge_config(const char *k, const char *v, void *cb)
 		return 0;
 	}
 
-	status = fmt_merge_msg_config(k, v, cb);
+	status = fmt_merge_msg_config(k, v, ctx, cb);
 	if (status)
 		return status;
-	status = git_gpg_config(k, v, NULL);
-	if (status)
-		return status;
-	return git_diff_ui_config(k, v, cb);
+	return git_diff_ui_config(k, v, ctx, cb);
 }
 
 static int read_tree_trivial(struct object_id *common, struct object_id *head,
@@ -687,8 +658,8 @@ static int read_tree_trivial(struct object_id *common, struct object_id *head,
 
 	memset(&opts, 0, sizeof(opts));
 	opts.head_idx = 2;
-	opts.src_index = &the_index;
-	opts.dst_index = &the_index;
+	opts.src_index = the_repository->index;
+	opts.dst_index = the_repository->index;
 	opts.update = 1;
 	opts.verbose_update = 1;
 	opts.trivial_merges_only = 1;
@@ -704,10 +675,11 @@ static int read_tree_trivial(struct object_id *common, struct object_id *head,
 	if (!trees[nr_trees++])
 		return -1;
 	opts.fn = threeway_merge;
-	cache_tree_free(&active_cache_tree);
+	cache_tree_free(&the_repository->index->cache_tree);
 	for (i = 0; i < nr_trees; i++) {
 		parse_tree(trees[i]);
-		init_tree_desc(t+i, trees[i]->buffer, trees[i]->size);
+		init_tree_desc(t+i, &trees[i]->object.oid,
+			       trees[i]->buffer, trees[i]->size);
 	}
 	if (unpack_trees(nr_trees, t, &opts))
 		return -1;
@@ -716,7 +688,7 @@ static int read_tree_trivial(struct object_id *common, struct object_id *head,
 
 static void write_tree_trivial(struct object_id *oid)
 {
-	if (write_cache_as_tree(oid, 0, NULL))
+	if (write_index_as_tree(oid, the_repository->index, get_index_file(), 0, NULL))
 		die(_("git write-tree failed to write a tree"));
 }
 
@@ -726,7 +698,9 @@ static int try_merge_strategy(const char *strategy, struct commit_list *common,
 {
 	const char *head_arg = "HEAD";
 
-	if (refresh_and_write_cache(REFRESH_QUIET, SKIP_IF_UNCHANGED, 0) < 0)
+	if (repo_refresh_and_write_index(the_repository, REFRESH_QUIET,
+					 SKIP_IF_UNCHANGED, 0, NULL, NULL,
+					 NULL) < 0)
 		return error(_("Unable to write index."));
 
 	if (!strcmp(strategy, "recursive") || !strcmp(strategy, "subtree") ||
@@ -750,9 +724,9 @@ static int try_merge_strategy(const char *strategy, struct commit_list *common,
 		o.show_rename_progress =
 			show_progress == -1 ? isatty(2) : show_progress;
 
-		for (x = 0; x < xopts_nr; x++)
-			if (parse_merge_opt(&o, xopts[x]))
-				die(_("unknown strategy option: -X%s"), xopts[x]);
+		for (x = 0; x < xopts.nr; x++)
+			if (parse_merge_opt(&o, xopts.v[x]))
+				die(_("unknown strategy option: -X%s"), xopts.v[x]);
 
 		o.branch1 = head_arg;
 		o.branch2 = merge_remote_util(remoteheads->item)->name;
@@ -760,7 +734,8 @@ static int try_merge_strategy(const char *strategy, struct commit_list *common,
 		for (j = common; j; j = j->next)
 			commit_list_insert(j->item, &reversed);
 
-		hold_locked_index(&lock, LOCK_DIE_ON_ERROR);
+		repo_hold_locked_index(the_repository, &lock,
+				       LOCK_DIE_ON_ERROR);
 		if (!strcmp(strategy, "ort"))
 			clean = merge_ort_recursive(&o, head, remoteheads->item,
 						    reversed, &result);
@@ -771,19 +746,19 @@ static int try_merge_strategy(const char *strategy, struct commit_list *common,
 			rollback_lock_file(&lock);
 			return 2;
 		}
-		if (write_locked_index(&the_index, &lock,
+		if (write_locked_index(the_repository->index, &lock,
 				       COMMIT_LOCK | SKIP_IF_UNCHANGED))
 			die(_("unable to write %s"), get_index_file());
 		return clean ? 0 : 1;
 	} else {
 		return try_merge_command(the_repository,
-					 strategy, xopts_nr, xopts,
+					 strategy, xopts.nr, xopts.v,
 					 common, head_arg, remoteheads);
 	}
 }
 
 static void count_diff_files(struct diff_queue_struct *q,
-			     struct diff_options *opt, void *data)
+			     struct diff_options *opt UNUSED, void *data)
 {
 	int *count = data;
 
@@ -794,8 +769,8 @@ static int count_unmerged_entries(void)
 {
 	int i, ret = 0;
 
-	for (i = 0; i < active_nr; i++)
-		if (ce_stage(active_cache[i]))
+	for (i = 0; i < the_repository->index->cache_nr; i++)
+		if (ce_stage(the_repository->index->cache[i]))
 			ret++;
 
 	return ret;
@@ -848,7 +823,7 @@ static const char scissors_editor_comment[] =
 N_("An empty message aborts the commit.\n");
 
 static const char no_scissors_editor_comment[] =
-N_("Lines starting with '%c' will be ignored, and an empty message aborts\n"
+N_("Lines starting with '%s' will be ignored, and an empty message aborts\n"
    "the commit.\n");
 
 static void write_merge_heads(struct commit_list *);
@@ -869,9 +844,9 @@ static void prepare_to_commit(struct commit_list *remoteheads)
 		 * the editor and after we invoke run_status above.
 		 */
 		if (invoked_hook)
-			discard_cache();
+			discard_index(the_repository->index);
 	}
-	read_cache_from(index_file);
+	read_index_from(the_repository->index, index_file, get_git_dir());
 	strbuf_addbuf(&msg, &merge_msg);
 	if (squash)
 		BUG("the control must not reach here under --squash");
@@ -879,17 +854,19 @@ static void prepare_to_commit(struct commit_list *remoteheads)
 		strbuf_addch(&msg, '\n');
 		if (cleanup_mode == COMMIT_MSG_CLEANUP_SCISSORS) {
 			wt_status_append_cut_line(&msg);
-			strbuf_commented_addf(&msg, "\n");
+			strbuf_commented_addf(&msg, comment_line_str, "\n");
 		}
-		strbuf_commented_addf(&msg, _(merge_editor_comment));
+		strbuf_commented_addf(&msg, comment_line_str,
+				      _(merge_editor_comment));
 		if (cleanup_mode == COMMIT_MSG_CLEANUP_SCISSORS)
-			strbuf_commented_addf(&msg, _(scissors_editor_comment));
+			strbuf_commented_addf(&msg, comment_line_str,
+					      _(scissors_editor_comment));
 		else
-			strbuf_commented_addf(&msg,
-				_(no_scissors_editor_comment), comment_line_char);
+			strbuf_commented_addf(&msg, comment_line_str,
+				_(no_scissors_editor_comment), comment_line_str);
 	}
 	if (signoff)
-		append_signoff(&msg, ignore_non_trailer(msg.buf, msg.len), 0);
+		append_signoff(&msg, ignored_log_message_bytes(msg.buf, msg.len), 0);
 	write_merge_heads(remoteheads);
 	write_file_buf(git_path_merge_msg(the_repository), msg.buf, msg.len);
 	if (run_commit_hook(0 < option_edit, get_index_file(), NULL,
@@ -920,7 +897,9 @@ static int merge_trivial(struct commit *head, struct commit_list *remoteheads)
 	struct object_id result_tree, result_commit;
 	struct commit_list *parents, **pptr = &parents;
 
-	if (refresh_and_write_cache(REFRESH_QUIET, SKIP_IF_UNCHANGED, 0) < 0)
+	if (repo_refresh_and_write_index(the_repository, REFRESH_QUIET,
+					 SKIP_IF_UNCHANGED, 0, NULL, NULL,
+					 NULL) < 0)
 		return error(_("Unable to write index."));
 
 	write_tree_trivial(&result_tree);
@@ -979,7 +958,7 @@ static int suggest_conflicts(void)
 	 * Thus, we will get the cleanup mode which is returned when we _are_
 	 * using an editor.
 	 */
-	append_conflicts_hint(&the_index, &msgbuf,
+	append_conflicts_hint(the_repository->index, &msgbuf,
 			      get_cleanup_mode(cleanup_arg, 1));
 	fputs(msgbuf.buf, fp);
 	strbuf_release(&msgbuf);
@@ -1274,7 +1253,7 @@ static int merging_a_throwaway_tag(struct commit *commit)
 	 */
 	tag_ref = xstrfmt("refs/tags/%s",
 			  ((struct tag *)merge_remote_util(commit)->obj)->tag);
-	if (!read_ref(tag_ref, &oid) &&
+	if (!refs_read_ref(get_main_ref_store(the_repository), tag_ref, &oid) &&
 	    oideq(&oid, &merge_remote_util(commit)->obj->oid))
 		is_throwaway_tag = 0;
 	else
@@ -1306,7 +1285,9 @@ int cmd_merge(int argc, const char **argv, const char *prefix)
 	 * Check if we are _not_ on a detached HEAD, i.e. if there is a
 	 * current branch.
 	 */
-	branch = branch_to_free = resolve_refdup("HEAD", 0, &head_oid, NULL);
+	branch = branch_to_free = refs_resolve_refdup(get_main_ref_store(the_repository),
+						      "HEAD", 0, &head_oid,
+						      NULL);
 	if (branch)
 		skip_prefix(branch, "refs/heads/", &branch);
 
@@ -1337,7 +1318,8 @@ int cmd_merge(int argc, const char **argv, const char *prefix)
 	if (abort_current_merge) {
 		int nargc = 2;
 		const char *nargv[] = {"reset", "--merge", NULL};
-		struct strbuf stash_oid = STRBUF_INIT;
+		char stash_oid_hex[GIT_MAX_HEXSZ + 1];
+		struct object_id stash_oid = {0};
 
 		if (orig_argc != 2)
 			usage_msg_opt(_("--abort expects no arguments"),
@@ -1346,17 +1328,19 @@ int cmd_merge(int argc, const char **argv, const char *prefix)
 		if (!file_exists(git_path_merge_head(the_repository)))
 			die(_("There is no merge to abort (MERGE_HEAD missing)."));
 
-		if (read_oneliner(&stash_oid, git_path_merge_autostash(the_repository),
-		    READ_ONELINER_SKIP_IF_EMPTY))
-			unlink(git_path_merge_autostash(the_repository));
+		if (!refs_read_ref(get_main_ref_store(the_repository), "MERGE_AUTOSTASH", &stash_oid))
+			refs_delete_ref(get_main_ref_store(the_repository),
+					"", "MERGE_AUTOSTASH", &stash_oid,
+					REF_NO_DEREF);
 
 		/* Invoke 'git reset --merge' */
 		ret = cmd_reset(nargc, nargv, prefix);
 
-		if (stash_oid.len)
-			apply_autostash_oid(stash_oid.buf);
+		if (!is_null_oid(&stash_oid)) {
+			oid_to_hex_r(stash_oid_hex, &stash_oid);
+			apply_autostash_oid(stash_oid_hex);
+		}
 
-		strbuf_release(&stash_oid);
 		goto done;
 	}
 
@@ -1386,7 +1370,7 @@ int cmd_merge(int argc, const char **argv, const char *prefix)
 		goto done;
 	}
 
-	if (read_cache_unmerged())
+	if (repo_read_index_unmerged(the_repository))
 		die_resolve_conflict("merge");
 
 	if (file_exists(git_path_merge_head(the_repository))) {
@@ -1400,14 +1384,14 @@ int cmd_merge(int argc, const char **argv, const char *prefix)
 		else
 			die(_("You have not concluded your merge (MERGE_HEAD exists)."));
 	}
-	if (ref_exists("CHERRY_PICK_HEAD")) {
+	if (refs_ref_exists(get_main_ref_store(the_repository), "CHERRY_PICK_HEAD")) {
 		if (advice_enabled(ADVICE_RESOLVE_CONFLICT))
 			die(_("You have not concluded your cherry-pick (CHERRY_PICK_HEAD exists).\n"
 			    "Please, commit your changes before you merge."));
 		else
 			die(_("You have not concluded your cherry-pick (CHERRY_PICK_HEAD exists)."));
 	}
-	resolve_undo_clear();
+	resolve_undo_clear_index(the_repository->index);
 
 	if (option_edit < 0)
 		option_edit = default_edit_option();
@@ -1470,9 +1454,11 @@ int cmd_merge(int argc, const char **argv, const char *prefix)
 					       check_trust_level);
 
 		remote_head_oid = &remoteheads->item->object.oid;
-		read_empty(remote_head_oid, 0);
-		update_ref("initial pull", "HEAD", remote_head_oid, NULL, 0,
-			   UPDATE_REFS_DIE_ON_ERR);
+		read_empty(remote_head_oid);
+		refs_update_ref(get_main_ref_store(the_repository),
+				"initial pull", "HEAD", remote_head_oid, NULL,
+				0,
+				UPDATE_REFS_DIE_ON_ERR);
 		goto done;
 	}
 
@@ -1535,17 +1521,27 @@ int cmd_merge(int argc, const char **argv, const char *prefix)
 
 	if (!remoteheads)
 		; /* already up-to-date */
-	else if (!remoteheads->next)
-		common = get_merge_bases(head_commit, remoteheads->item);
-	else {
+	else if (!remoteheads->next) {
+		if (repo_get_merge_bases(the_repository, head_commit,
+					 remoteheads->item, &common) < 0) {
+			ret = 2;
+			goto done;
+		}
+	} else {
 		struct commit_list *list = remoteheads;
 		commit_list_insert(head_commit, &list);
-		common = get_octopus_merge_bases(list);
+		if (get_octopus_merge_bases(list, &common) < 0) {
+			free(list);
+			ret = 2;
+			goto done;
+		}
 		free(list);
 	}
 
-	update_ref("updating ORIG_HEAD", "ORIG_HEAD",
-		   &head_commit->object.oid, NULL, 0, UPDATE_REFS_DIE_ON_ERR);
+	refs_update_ref(get_main_ref_store(the_repository),
+			"updating ORIG_HEAD", "ORIG_HEAD",
+			&head_commit->object.oid, NULL, 0,
+			UPDATE_REFS_DIE_ON_ERR);
 
 	if (remoteheads && !common) {
 		/* No common ancestors found. */
@@ -1565,20 +1561,18 @@ int cmd_merge(int argc, const char **argv, const char *prefix)
 			!common->next &&
 			oideq(&common->item->object.oid, &head_commit->object.oid)) {
 		/* Again the most common case of merging one remote. */
-		struct strbuf msg = STRBUF_INIT;
+		const char *msg = have_message ?
+			"Fast-forward (no commit created; -m option ignored)" :
+			"Fast-forward";
 		struct commit *commit;
 
 		if (verbosity >= 0) {
 			printf(_("Updating %s..%s\n"),
-			       find_unique_abbrev(&head_commit->object.oid,
-						  DEFAULT_ABBREV),
-			       find_unique_abbrev(&remoteheads->item->object.oid,
-						  DEFAULT_ABBREV));
+			       repo_find_unique_abbrev(the_repository, &head_commit->object.oid,
+						       DEFAULT_ABBREV),
+			       repo_find_unique_abbrev(the_repository, &remoteheads->item->object.oid,
+						       DEFAULT_ABBREV));
 		}
-		strbuf_addstr(&msg, "Fast-forward");
-		if (have_message)
-			strbuf_addstr(&msg,
-				" (no commit created; -m option ignored)");
 		commit = remoteheads->item;
 		if (!commit) {
 			ret = 1;
@@ -1586,20 +1580,18 @@ int cmd_merge(int argc, const char **argv, const char *prefix)
 		}
 
 		if (autostash)
-			create_autostash(the_repository,
-					 git_path_merge_autostash(the_repository));
+			create_autostash_ref(the_repository, "MERGE_AUTOSTASH");
 		if (checkout_fast_forward(the_repository,
 					  &head_commit->object.oid,
 					  &commit->object.oid,
 					  overwrite_ignore)) {
-			apply_autostash(git_path_merge_autostash(the_repository));
+			apply_autostash_ref(the_repository, "MERGE_AUTOSTASH");
 			ret = 1;
 			goto done;
 		}
 
-		finish(head_commit, remoteheads, &commit->object.oid, msg.buf);
+		finish(head_commit, remoteheads, &commit->object.oid, msg);
 		remove_merge_branch_state(the_repository);
-		strbuf_release(&msg);
 		goto done;
 	} else if (!remoteheads->next && common->next)
 		;
@@ -1612,13 +1604,14 @@ int cmd_merge(int argc, const char **argv, const char *prefix)
 		 * We are not doing octopus, not fast-forward, and have
 		 * only one common.
 		 */
-		refresh_cache(REFRESH_QUIET);
+		refresh_index(the_repository->index, REFRESH_QUIET, NULL, NULL, NULL);
 		if (allow_trivial && fast_forward != FF_ONLY) {
 			/*
 			 * Must first ensure that index matches HEAD before
 			 * attempting a trivial merge.
 			 */
-			struct tree *head_tree = get_commit_tree(head_commit);
+			struct tree *head_tree = repo_get_commit_tree(the_repository,
+								      head_commit);
 			struct strbuf sb = STRBUF_INIT;
 
 			if (repo_index_has_changes(the_repository, head_tree,
@@ -1626,7 +1619,8 @@ int cmd_merge(int argc, const char **argv, const char *prefix)
 				error(_("Your local changes to the following files would be overwritten by merge:\n  %s"),
 				      sb.buf);
 				strbuf_release(&sb);
-				return 2;
+				ret = 2;
+				goto done;
 			}
 
 			/* See if it is really trivial. */
@@ -1649,15 +1643,21 @@ int cmd_merge(int argc, const char **argv, const char *prefix)
 		struct commit_list *j;
 
 		for (j = remoteheads; j; j = j->next) {
-			struct commit_list *common_one;
+			struct commit_list *common_one = NULL;
+			struct commit *common_item;
 
 			/*
 			 * Here we *have* to calculate the individual
 			 * merge_bases again, otherwise "git merge HEAD^
 			 * HEAD^^" would be missed.
 			 */
-			common_one = get_merge_bases(head_commit, j->item);
-			if (!oideq(&common_one->item->object.oid, &j->item->object.oid)) {
+			if (repo_get_merge_bases(the_repository, head_commit,
+						 j->item, &common_one) < 0)
+				exit(128);
+
+			common_item = common_one->item;
+			free_commit_list(common_one);
+			if (!oideq(&common_item->object.oid, &j->item->object.oid)) {
 				up_to_date = 0;
 				break;
 			}
@@ -1672,8 +1672,7 @@ int cmd_merge(int argc, const char **argv, const char *prefix)
 		die_ff_impossible();
 
 	if (autostash)
-		create_autostash(the_repository,
-				 git_path_merge_autostash(the_repository));
+		create_autostash_ref(the_repository, "MERGE_AUTOSTASH");
 
 	/* We are going to make a new commit. */
 	git_committer_info(IDENT_STRICT);
@@ -1758,7 +1757,7 @@ int cmd_merge(int argc, const char **argv, const char *prefix)
 		else
 			fprintf(stderr, _("Merge with strategy %s failed.\n"),
 				use_strategies[0]->name);
-		apply_autostash(git_path_merge_autostash(the_repository));
+		apply_autostash_ref(the_repository, "MERGE_AUTOSTASH");
 		ret = 2;
 		goto done;
 	} else if (best_strategy == wt_strategy)
@@ -1794,5 +1793,6 @@ done:
 	}
 	strbuf_release(&buf);
 	free(branch_to_free);
+	discard_index(the_repository->index);
 	return ret;
 }