From cf73936ddf4ba56b34ea03cce1657efa5fa3decc Mon Sep 17 00:00:00 2001 From: Taylor Blau Date: Tue, 25 Jun 2024 13:39:16 -0400 Subject: commit-graph: ensure Bloom filters are read with consistent settings MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit The changed-path Bloom filter mechanism is parameterized by a couple of variables, notably the number of bits per hash (typically "m" in Bloom filter literature) and the number of hashes themselves (typically "k"). It is critically important that filters are read with the Bloom filter settings that they were written with. Failing to do so would mean that each query is liable to compute different fingerprints, meaning that the filter itself could return a false negative. This goes against a basic assumption of using Bloom filters (that they may return false positives, but never false negatives) and can lead to incorrect results. We have some existing logic to carry forward existing Bloom filter settings from one layer to the next. In `write_commit_graph()`, we have something like: if (!(flags & COMMIT_GRAPH_NO_WRITE_BLOOM_FILTERS)) { struct commit_graph *g = ctx->r->objects->commit_graph; /* We have changed-paths already. Keep them in the next graph */ if (g && g->chunk_bloom_data) { ctx->changed_paths = 1; ctx->bloom_settings = g->bloom_filter_settings; } } , which drags forward Bloom filter settings across adjacent layers. This doesn't quite address all cases, however, since it is possible for intermediate layers to contain no Bloom filters at all. For example, suppose we have two layers in a commit-graph chain, say, {G1, G2}. If G1 contains Bloom filters, but G2 doesn't, a new G3 (whose base graph is G2) may be written with arbitrary Bloom filter settings, because we only check the immediately adjacent layer's settings for compatibility. This behavior has existed since the introduction of changed-path Bloom filters. But in practice, this is not such a big deal, since the only way up until this point to modify the Bloom filter settings at write time is with the undocumented environment variables: - GIT_TEST_BLOOM_SETTINGS_BITS_PER_ENTRY - GIT_TEST_BLOOM_SETTINGS_NUM_HASHES - GIT_TEST_BLOOM_SETTINGS_MAX_CHANGED_PATHS (it is still possible to tweak MAX_CHANGED_PATHS between layers, but this does not affect reads, so is allowed to differ across multiple graph layers). But in future commits, we will introduce another parameter to change the hash algorithm used to compute Bloom fingerprints itself. This will be exposed via a configuration setting, making this foot-gun easier to use. To prevent this potential issue, validate that all layers of a split commit-graph have compatible settings with the newest layer which contains Bloom filters. Reported-by: SZEDER Gábor Original-test-by: SZEDER Gábor Signed-off-by: Taylor Blau Signed-off-by: Junio C Hamano --- commit-graph.c | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) (limited to 'commit-graph.c') diff --git a/commit-graph.c b/commit-graph.c index bba316913c..00113b0f62 100644 --- a/commit-graph.c +++ b/commit-graph.c @@ -543,6 +543,30 @@ static int validate_mixed_generation_chain(struct commit_graph *g) return 0; } +static void validate_mixed_bloom_settings(struct commit_graph *g) +{ + struct bloom_filter_settings *settings = NULL; + for (; g; g = g->base_graph) { + if (!g->bloom_filter_settings) + continue; + if (!settings) { + settings = g->bloom_filter_settings; + continue; + } + + if (g->bloom_filter_settings->bits_per_entry != settings->bits_per_entry || + g->bloom_filter_settings->num_hashes != settings->num_hashes) { + g->chunk_bloom_indexes = NULL; + g->chunk_bloom_data = NULL; + FREE_AND_NULL(g->bloom_filter_settings); + + warning(_("disabling Bloom filters for commit-graph " + "layer '%s' due to incompatible settings"), + oid_to_hex(&g->oid)); + } + } +} + static int add_graph_to_chain(struct commit_graph *g, struct commit_graph *chain, struct object_id *oids, @@ -666,6 +690,7 @@ struct commit_graph *load_commit_graph_chain_fd_st(struct repository *r, } validate_mixed_generation_chain(graph_chain); + validate_mixed_bloom_settings(graph_chain); free(oids); fclose(fp); -- cgit v1.2.3 From ea0024deb9faa5474673a3db8f4f98812b48f44d Mon Sep 17 00:00:00 2001 From: Taylor Blau Date: Tue, 25 Jun 2024 13:39:50 -0400 Subject: repo-settings: introduce commitgraph.changedPathsVersion A subsequent commit will introduce another version of the changed-path filter in the commit graph file. In order to control which version to write (and read), a config variable is needed. Therefore, introduce this config variable. For forwards compatibility, teach Git to not read commit graphs when the config variable is set to an unsupported version. Because we teach Git this, commitgraph.readChangedPaths is now redundant, so deprecate it and define its behavior in terms of the config variable we introduce. This commit does not change the behavior of writing (Git writes changed path filters when explicitly instructed regardless of any config variable), but a subsequent commit will restrict Git such that it will only write when commitgraph.changedPathsVersion is a recognized value. Signed-off-by: Jonathan Tan Signed-off-by: Junio C Hamano Signed-off-by: Taylor Blau Signed-off-by: Junio C Hamano --- Documentation/config/commitgraph.txt | 26 +++++++++++++++++++++++--- commit-graph.c | 5 +++-- oss-fuzz/fuzz-commit-graph.c | 2 +- repo-settings.c | 6 +++++- repository.h | 2 +- 5 files changed, 33 insertions(+), 8 deletions(-) (limited to 'commit-graph.c') diff --git a/Documentation/config/commitgraph.txt b/Documentation/config/commitgraph.txt index 30604e4a4c..e68cdededa 100644 --- a/Documentation/config/commitgraph.txt +++ b/Documentation/config/commitgraph.txt @@ -9,6 +9,26 @@ commitGraph.maxNewFilters:: commit-graph write` (c.f., linkgit:git-commit-graph[1]). commitGraph.readChangedPaths:: - If true, then git will use the changed-path Bloom filters in the - commit-graph file (if it exists, and they are present). Defaults to - true. See linkgit:git-commit-graph[1] for more information. + Deprecated. Equivalent to commitGraph.changedPathsVersion=-1 if true, and + commitGraph.changedPathsVersion=0 if false. (If commitGraph.changedPathVersion + is also set, commitGraph.changedPathsVersion takes precedence.) + +commitGraph.changedPathsVersion:: + Specifies the version of the changed-path Bloom filters that Git will read and + write. May be -1, 0 or 1. Note that values greater than 1 may be + incompatible with older versions of Git which do not yet understand + those versions. Use caution when operating in a mixed-version + environment. ++ +Defaults to -1. ++ +If -1, Git will use the version of the changed-path Bloom filters in the +repository, defaulting to 1 if there are none. ++ +If 0, Git will not read any Bloom filters, and will write version 1 Bloom +filters when instructed to write. ++ +If 1, Git will only read version 1 Bloom filters, and will write version 1 +Bloom filters. ++ +See linkgit:git-commit-graph[1] for more information. diff --git a/commit-graph.c b/commit-graph.c index 00113b0f62..91c98ebc6c 100644 --- a/commit-graph.c +++ b/commit-graph.c @@ -459,7 +459,7 @@ struct commit_graph *parse_commit_graph(struct repo_settings *s, graph->read_generation_data = 1; } - if (s->commit_graph_read_changed_paths) { + if (s->commit_graph_changed_paths_version) { read_chunk(cf, GRAPH_CHUNKID_BLOOMINDEXES, graph_read_bloom_index, graph); read_chunk(cf, GRAPH_CHUNKID_BLOOMDATA, @@ -555,7 +555,8 @@ static void validate_mixed_bloom_settings(struct commit_graph *g) } if (g->bloom_filter_settings->bits_per_entry != settings->bits_per_entry || - g->bloom_filter_settings->num_hashes != settings->num_hashes) { + g->bloom_filter_settings->num_hashes != settings->num_hashes || + g->bloom_filter_settings->hash_version != settings->hash_version) { g->chunk_bloom_indexes = NULL; g->chunk_bloom_data = NULL; FREE_AND_NULL(g->bloom_filter_settings); diff --git a/oss-fuzz/fuzz-commit-graph.c b/oss-fuzz/fuzz-commit-graph.c index 2992079dd9..325c0b991a 100644 --- a/oss-fuzz/fuzz-commit-graph.c +++ b/oss-fuzz/fuzz-commit-graph.c @@ -19,7 +19,7 @@ int LLVMFuzzerTestOneInput(const uint8_t *data, size_t size) * possible. */ the_repository->settings.commit_graph_generation_version = 2; - the_repository->settings.commit_graph_read_changed_paths = 1; + the_repository->settings.commit_graph_changed_paths_version = 1; g = parse_commit_graph(&the_repository->settings, (void *)data, size); repo_clear(the_repository); free_commit_graph(g); diff --git a/repo-settings.c b/repo-settings.c index 30cd478762..c821583fe5 100644 --- a/repo-settings.c +++ b/repo-settings.c @@ -23,6 +23,7 @@ void prepare_repo_settings(struct repository *r) int value; const char *strval; int manyfiles; + int read_changed_paths; if (!r->gitdir) BUG("Cannot add settings for uninitialized repository"); @@ -53,7 +54,10 @@ void prepare_repo_settings(struct repository *r) /* Commit graph config or default, does not cascade (simple) */ repo_cfg_bool(r, "core.commitgraph", &r->settings.core_commit_graph, 1); repo_cfg_int(r, "commitgraph.generationversion", &r->settings.commit_graph_generation_version, 2); - repo_cfg_bool(r, "commitgraph.readchangedpaths", &r->settings.commit_graph_read_changed_paths, 1); + repo_cfg_bool(r, "commitgraph.readchangedpaths", &read_changed_paths, 1); + repo_cfg_int(r, "commitgraph.changedpathsversion", + &r->settings.commit_graph_changed_paths_version, + read_changed_paths ? -1 : 0); repo_cfg_bool(r, "gc.writecommitgraph", &r->settings.gc_write_commit_graph, 1); repo_cfg_bool(r, "fetch.writecommitgraph", &r->settings.fetch_write_commit_graph, 0); diff --git a/repository.h b/repository.h index 5f18486f64..f71154e12c 100644 --- a/repository.h +++ b/repository.h @@ -29,7 +29,7 @@ struct repo_settings { int core_commit_graph; int commit_graph_generation_version; - int commit_graph_read_changed_paths; + int commit_graph_changed_paths_version; int gc_write_commit_graph; int fetch_write_commit_graph; int command_requires_full_index; -- cgit v1.2.3 From 638e1702d7cf3ca000f355432b7c12bd4a27b244 Mon Sep 17 00:00:00 2001 From: Taylor Blau Date: Tue, 25 Jun 2024 13:40:00 -0400 Subject: commit-graph: unconditionally load Bloom filters In an earlier commit, we began ignoring the Bloom data ("BDAT") chunk for commit-graphs whose Bloom filters were computed using a hash version incompatible with the value of `commitGraph.changedPathVersion`. Now that the Bloom API has been hardened to discard these incompatible filters (with the exception of low-level APIs), we can safely load these Bloom filters unconditionally. We no longer want to return early from `graph_read_bloom_data()`, and similarly do not want to set the bloom_settings' `hash_version` field as a side-effect. The latter is because we want to wait until we know which Bloom settings we're using (either the defaults, from the GIT_TEST variables, or from the previous commit-graph layer) before deciding what hash_version to use. If we detect an existing BDAT chunk, we'll infer the rest of the settings (e.g., number of hashes, bits per entry, and maximum number of changed paths) from the earlier graph layer. The hash_version will be inferred from the previous layer as well, unless one has already been specified via configuration. Once all of that is done, we normalize the value of the hash_version to either "1" or "2". Signed-off-by: Taylor Blau Signed-off-by: Junio C Hamano --- commit-graph.c | 14 ++++++++++---- 1 file changed, 10 insertions(+), 4 deletions(-) (limited to 'commit-graph.c') diff --git a/commit-graph.c b/commit-graph.c index 91c98ebc6c..d6fb714f32 100644 --- a/commit-graph.c +++ b/commit-graph.c @@ -358,9 +358,6 @@ static int graph_read_bloom_data(const unsigned char *chunk_start, g->chunk_bloom_data_size = chunk_size; hash_version = get_be32(chunk_start); - if (hash_version != 1) - return 0; - g->bloom_filter_settings = xmalloc(sizeof(struct bloom_filter_settings)); g->bloom_filter_settings->hash_version = hash_version; g->bloom_filter_settings->num_hashes = get_be32(chunk_start + 4); @@ -2513,6 +2510,7 @@ int write_commit_graph(struct object_directory *odb, ctx->write_generation_data = (get_configured_generation_version(r) == 2); ctx->num_generation_data_overflows = 0; + bloom_settings.hash_version = r->settings.commit_graph_changed_paths_version; bloom_settings.bits_per_entry = git_env_ulong("GIT_TEST_BLOOM_SETTINGS_BITS_PER_ENTRY", bloom_settings.bits_per_entry); bloom_settings.num_hashes = git_env_ulong("GIT_TEST_BLOOM_SETTINGS_NUM_HASHES", @@ -2544,10 +2542,18 @@ int write_commit_graph(struct object_directory *odb, /* We have changed-paths already. Keep them in the next graph */ if (g && g->chunk_bloom_data) { ctx->changed_paths = 1; - ctx->bloom_settings = g->bloom_filter_settings; + + /* don't propagate the hash_version unless unspecified */ + if (bloom_settings.hash_version == -1) + bloom_settings.hash_version = g->bloom_filter_settings->hash_version; + bloom_settings.bits_per_entry = g->bloom_filter_settings->bits_per_entry; + bloom_settings.num_hashes = g->bloom_filter_settings->num_hashes; + bloom_settings.max_changed_paths = g->bloom_filter_settings->max_changed_paths; } } + bloom_settings.hash_version = bloom_settings.hash_version == 2 ? 2 : 1; + if (ctx->split) { struct commit_graph *g = ctx->r->objects->commit_graph; -- cgit v1.2.3 From ba5a81d52b9a4c4608b6a645d2cc6f508bcb66b4 Mon Sep 17 00:00:00 2001 From: Taylor Blau Date: Tue, 25 Jun 2024 13:40:04 -0400 Subject: commit-graph: new Bloom filter version that fixes murmur3 The murmur3 implementation in bloom.c has a bug when converting series of 4 bytes into network-order integers when char is signed (which is controllable by a compiler option, and the default signedness of char is platform-specific). When a string contains characters with the high bit set, this bug causes results that, although internally consistent within Git, does not accord with other implementations of murmur3 (thus, the changed path filters wouldn't be readable by other off-the-shelf implementatios of murmur3) and even with Git binaries that were compiled with different signedness of char. This bug affects both how Git writes changed path filters to disk and how Git interprets changed path filters on disk. Therefore, introduce a new version (2) of changed path filters that corrects this problem. The existing version (1) is still supported and is still the default, but users should migrate away from it as soon as possible. Because this bug only manifests with characters that have the high bit set, it may be possible that some (or all) commits in a given repo would have the same changed path filter both before and after this fix is applied. However, in order to determine whether this is the case, the changed paths would first have to be computed, at which point it is not much more expensive to just compute a new changed path filter. So this patch does not include any mechanism to "salvage" changed path filters from repositories. There is also no "mixed" mode - for each invocation of Git, reading and writing changed path filters are done with the same version number; this version number may be explicitly stated (typically if the user knows which version they need) or automatically determined from the version of the existing changed path filters in the repository. There is a change in write_commit_graph(). graph_read_bloom_data() makes it possible for chunk_bloom_data to be non-NULL but bloom_filter_settings to be NULL, which causes a segfault later on. I produced such a segfault while developing this patch, but couldn't find a way to reproduce it neither after this complete patch (or before), but in any case it seemed like a good thing to include that might help future patch authors. The value in t0095 was obtained from another murmur3 implementation using the following Go source code: package main import "fmt" import "github.com/spaolacci/murmur3" func main() { fmt.Printf("%x\n", murmur3.Sum32([]byte("Hello world!"))) fmt.Printf("%x\n", murmur3.Sum32([]byte{0x99, 0xaa, 0xbb, 0xcc, 0xdd, 0xee, 0xff})) } Signed-off-by: Jonathan Tan Signed-off-by: Junio C Hamano Signed-off-by: Taylor Blau Signed-off-by: Junio C Hamano Signed-off-by: Taylor Blau Signed-off-by: Junio C Hamano --- Documentation/config/commitgraph.txt | 5 +- bloom.c | 69 +++++++++++++++- bloom.h | 8 +- commit-graph.c | 13 ++- t/helper/test-bloom.c | 9 +- t/t0095-bloom.sh | 8 ++ t/t4216-log-bloom.sh | 155 ++++++++++++++++++++++++++++++++++- 7 files changed, 252 insertions(+), 15 deletions(-) (limited to 'commit-graph.c') diff --git a/Documentation/config/commitgraph.txt b/Documentation/config/commitgraph.txt index e68cdededa..7f8c9d6638 100644 --- a/Documentation/config/commitgraph.txt +++ b/Documentation/config/commitgraph.txt @@ -15,7 +15,7 @@ commitGraph.readChangedPaths:: commitGraph.changedPathsVersion:: Specifies the version of the changed-path Bloom filters that Git will read and - write. May be -1, 0 or 1. Note that values greater than 1 may be + write. May be -1, 0, 1, or 2. Note that values greater than 1 may be incompatible with older versions of Git which do not yet understand those versions. Use caution when operating in a mixed-version environment. @@ -31,4 +31,7 @@ filters when instructed to write. If 1, Git will only read version 1 Bloom filters, and will write version 1 Bloom filters. + +If 2, Git will only read version 2 Bloom filters, and will write version 2 +Bloom filters. ++ See linkgit:git-commit-graph[1] for more information. diff --git a/bloom.c b/bloom.c index c24489dbcf..323d8012b8 100644 --- a/bloom.c +++ b/bloom.c @@ -100,7 +100,64 @@ int load_bloom_filter_from_graph(struct commit_graph *g, * Not considered to be cryptographically secure. * Implemented as described in https://en.wikipedia.org/wiki/MurmurHash#Algorithm */ -uint32_t murmur3_seeded(uint32_t seed, const char *data, size_t len) +uint32_t murmur3_seeded_v2(uint32_t seed, const char *data, size_t len) +{ + const uint32_t c1 = 0xcc9e2d51; + const uint32_t c2 = 0x1b873593; + const uint32_t r1 = 15; + const uint32_t r2 = 13; + const uint32_t m = 5; + const uint32_t n = 0xe6546b64; + int i; + uint32_t k1 = 0; + const char *tail; + + int len4 = len / sizeof(uint32_t); + + uint32_t k; + for (i = 0; i < len4; i++) { + uint32_t byte1 = (uint32_t)(unsigned char)data[4*i]; + uint32_t byte2 = ((uint32_t)(unsigned char)data[4*i + 1]) << 8; + uint32_t byte3 = ((uint32_t)(unsigned char)data[4*i + 2]) << 16; + uint32_t byte4 = ((uint32_t)(unsigned char)data[4*i + 3]) << 24; + k = byte1 | byte2 | byte3 | byte4; + k *= c1; + k = rotate_left(k, r1); + k *= c2; + + seed ^= k; + seed = rotate_left(seed, r2) * m + n; + } + + tail = (data + len4 * sizeof(uint32_t)); + + switch (len & (sizeof(uint32_t) - 1)) { + case 3: + k1 ^= ((uint32_t)(unsigned char)tail[2]) << 16; + /*-fallthrough*/ + case 2: + k1 ^= ((uint32_t)(unsigned char)tail[1]) << 8; + /*-fallthrough*/ + case 1: + k1 ^= ((uint32_t)(unsigned char)tail[0]) << 0; + k1 *= c1; + k1 = rotate_left(k1, r1); + k1 *= c2; + seed ^= k1; + break; + } + + seed ^= (uint32_t)len; + seed ^= (seed >> 16); + seed *= 0x85ebca6b; + seed ^= (seed >> 13); + seed *= 0xc2b2ae35; + seed ^= (seed >> 16); + + return seed; +} + +static uint32_t murmur3_seeded_v1(uint32_t seed, const char *data, size_t len) { const uint32_t c1 = 0xcc9e2d51; const uint32_t c2 = 0x1b873593; @@ -165,8 +222,14 @@ void fill_bloom_key(const char *data, int i; const uint32_t seed0 = 0x293ae76f; const uint32_t seed1 = 0x7e646e2c; - const uint32_t hash0 = murmur3_seeded(seed0, data, len); - const uint32_t hash1 = murmur3_seeded(seed1, data, len); + uint32_t hash0, hash1; + if (settings->hash_version == 2) { + hash0 = murmur3_seeded_v2(seed0, data, len); + hash1 = murmur3_seeded_v2(seed1, data, len); + } else { + hash0 = murmur3_seeded_v1(seed0, data, len); + hash1 = murmur3_seeded_v1(seed1, data, len); + } key->hashes = (uint32_t *)xcalloc(settings->num_hashes, sizeof(uint32_t)); for (i = 0; i < settings->num_hashes; i++) diff --git a/bloom.h b/bloom.h index 052a993aab..bfe389e29c 100644 --- a/bloom.h +++ b/bloom.h @@ -8,9 +8,11 @@ struct commit_graph; struct bloom_filter_settings { /* * The version of the hashing technique being used. - * We currently only support version = 1 which is + * The newest version is 2, which is * the seeded murmur3 hashing technique implemented - * in bloom.c. + * in bloom.c. Bloom filters of version 1 were created + * with prior versions of Git, which had a bug in the + * implementation of the hash function. */ uint32_t hash_version; @@ -81,7 +83,7 @@ int load_bloom_filter_from_graph(struct commit_graph *g, * Not considered to be cryptographically secure. * Implemented as described in https://en.wikipedia.org/wiki/MurmurHash#Algorithm */ -uint32_t murmur3_seeded(uint32_t seed, const char *data, size_t len); +uint32_t murmur3_seeded_v2(uint32_t seed, const char *data, size_t len); void fill_bloom_key(const char *data, size_t len, diff --git a/commit-graph.c b/commit-graph.c index d6fb714f32..ce4524e2b0 100644 --- a/commit-graph.c +++ b/commit-graph.c @@ -344,7 +344,6 @@ static int graph_read_bloom_data(const unsigned char *chunk_start, size_t chunk_size, void *data) { struct commit_graph *g = data; - uint32_t hash_version; if (chunk_size < BLOOMDATA_CHUNK_HEADER_SIZE) { warning(_("ignoring too-small changed-path chunk" @@ -356,10 +355,9 @@ static int graph_read_bloom_data(const unsigned char *chunk_start, g->chunk_bloom_data = chunk_start; g->chunk_bloom_data_size = chunk_size; - hash_version = get_be32(chunk_start); g->bloom_filter_settings = xmalloc(sizeof(struct bloom_filter_settings)); - g->bloom_filter_settings->hash_version = hash_version; + g->bloom_filter_settings->hash_version = get_be32(chunk_start); g->bloom_filter_settings->num_hashes = get_be32(chunk_start + 4); g->bloom_filter_settings->bits_per_entry = get_be32(chunk_start + 8); g->bloom_filter_settings->max_changed_paths = DEFAULT_BLOOM_MAX_CHANGES; @@ -2498,6 +2496,13 @@ int write_commit_graph(struct object_directory *odb, } if (!commit_graph_compatible(r)) return 0; + if (r->settings.commit_graph_changed_paths_version < -1 + || r->settings.commit_graph_changed_paths_version > 2) { + warning(_("attempting to write a commit-graph, but " + "'commitGraph.changedPathsVersion' (%d) is not supported"), + r->settings.commit_graph_changed_paths_version); + return 0; + } CALLOC_ARRAY(ctx, 1); ctx->r = r; @@ -2540,7 +2545,7 @@ int write_commit_graph(struct object_directory *odb, g = ctx->r->objects->commit_graph; /* We have changed-paths already. Keep them in the next graph */ - if (g && g->chunk_bloom_data) { + if (g && g->bloom_filter_settings) { ctx->changed_paths = 1; /* don't propagate the hash_version unless unspecified */ diff --git a/t/helper/test-bloom.c b/t/helper/test-bloom.c index 1281e66876..eefc1668c7 100644 --- a/t/helper/test-bloom.c +++ b/t/helper/test-bloom.c @@ -49,6 +49,7 @@ static void get_bloom_filter_for_commit(const struct object_id *commit_oid) static const char *bloom_usage = "\n" " test-tool bloom get_murmur3 \n" +" test-tool bloom get_murmur3_seven_highbit\n" " test-tool bloom generate_filter [...]\n" " test-tool bloom get_filter_for_commit \n"; @@ -63,7 +64,13 @@ int cmd__bloom(int argc, const char **argv) uint32_t hashed; if (argc < 3) usage(bloom_usage); - hashed = murmur3_seeded(0, argv[2], strlen(argv[2])); + hashed = murmur3_seeded_v2(0, argv[2], strlen(argv[2])); + printf("Murmur3 Hash with seed=0:0x%08x\n", hashed); + } + + if (!strcmp(argv[1], "get_murmur3_seven_highbit")) { + uint32_t hashed; + hashed = murmur3_seeded_v2(0, "\x99\xaa\xbb\xcc\xdd\xee\xff", 7); printf("Murmur3 Hash with seed=0:0x%08x\n", hashed); } diff --git a/t/t0095-bloom.sh b/t/t0095-bloom.sh index b567383eb8..c8d84ab606 100755 --- a/t/t0095-bloom.sh +++ b/t/t0095-bloom.sh @@ -29,6 +29,14 @@ test_expect_success 'compute unseeded murmur3 hash for test string 2' ' test_cmp expect actual ' +test_expect_success 'compute unseeded murmur3 hash for test string 3' ' + cat >expect <<-\EOF && + Murmur3 Hash with seed=0:0xa183ccfd + EOF + test-tool bloom get_murmur3_seven_highbit >actual && + test_cmp expect actual +' + test_expect_success 'compute bloom key for empty string' ' cat >expect <<-\EOF && Hashes:0x5615800c|0x5b966560|0x61174ab4|0x66983008|0x6c19155c|0x7199fab0|0x771ae004| diff --git a/t/t4216-log-bloom.sh b/t/t4216-log-bloom.sh index 49d1113171..cc6e5733f6 100755 --- a/t/t4216-log-bloom.sh +++ b/t/t4216-log-bloom.sh @@ -488,14 +488,49 @@ test_expect_success 'merge graph layers with incompatible Bloom settings' ' test_must_be_empty err ' +# chosen to be the same under all Unicode normalization forms +CENT=$(printf "\302\242") + +test_expect_success 'ensure Bloom filter with incompatible versions are ignored' ' + rm "$repo/$graph" && + + git -C $repo log --oneline --no-decorate -- $CENT >expect && + + # Compute v1 Bloom filters for commits at the bottom. + git -C $repo rev-parse HEAD^ >in && + git -C $repo commit-graph write --stdin-commits --changed-paths \ + --split in && + git -C $repo -c commitGraph.changedPathsVersion=2 commit-graph write \ + --stdin-commits --changed-paths --split=no-merge actual 2>err && + test_cmp expect actual && + + layer="$(head -n 1 $repo/$chain)" && + cat >expect.err <<-EOF && + warning: disabling Bloom filters for commit-graph layer $SQ$layer$SQ due to incompatible settings + EOF + test_cmp expect.err err && + + # Merge the two layers with incompatible bloom filter versions, + # ensuring that the v2 filters are used. + >trace2.txt && + GIT_TRACE2_EVENT="$(pwd)/trace2.txt" \ + git -C $repo -c commitGraph.changedPathsVersion=2 commit-graph write --reachable --changed-paths 2>err && + grep "disabling Bloom filters for commit-graph layer .$layer." err && + grep "{\"hash_version\":2,\"num_hashes\":7,\"bits_per_entry\":10,\"max_changed_paths\":512" trace2.txt +' + get_first_changed_path_filter () { test-tool read-graph bloom-filters >filters.dat && head -n 1 filters.dat } -# chosen to be the same under all Unicode normalization forms -CENT=$(printf "\302\242") - test_expect_success 'set up repo with high bit path, version 1 changed-path' ' git init highbit1 && test_commit -C highbit1 c1 "$CENT" && @@ -539,6 +574,120 @@ test_expect_success 'version 1 changed-path used when version 1 requested' ' ) ' +test_expect_success 'version 1 changed-path not used when version 2 requested' ' + ( + cd highbit1 && + git config --add commitGraph.changedPathsVersion 2 && + test_bloom_filters_not_used "-- another$CENT" + ) +' + +test_expect_success 'version 1 changed-path used when autodetect requested' ' + ( + cd highbit1 && + git config --add commitGraph.changedPathsVersion -1 && + test_bloom_filters_used "-- another$CENT" + ) +' + +test_expect_success 'when writing another commit graph, preserve existing version 1 of changed-path' ' + test_commit -C highbit1 c1double "$CENT$CENT" && + git -C highbit1 commit-graph write --reachable --changed-paths && + ( + cd highbit1 && + git config --add commitGraph.changedPathsVersion -1 && + echo "options: bloom(1,10,7) read_generation_data" >expect && + test-tool read-graph >full && + grep options full >actual && + test_cmp expect actual + ) +' + +test_expect_success 'set up repo with high bit path, version 2 changed-path' ' + git init highbit2 && + git -C highbit2 config --add commitGraph.changedPathsVersion 2 && + test_commit -C highbit2 c2 "$CENT" && + git -C highbit2 commit-graph write --reachable --changed-paths +' + +test_expect_success 'check value of version 2 changed-path' ' + ( + cd highbit2 && + echo "c01f" >expect && + get_first_changed_path_filter >actual && + test_cmp expect actual + ) +' + +test_expect_success 'setup make another commit' ' + # "git log" does not use Bloom filters for root commits - see how, in + # revision.c, rev_compare_tree() (the only code path that eventually calls + # get_bloom_filter()) is only called by try_to_simplify_commit() when the commit + # has one parent. Therefore, make another commit so that we perform the tests on + # a non-root commit. + test_commit -C highbit2 anotherc2 "another$CENT" +' + +test_expect_success 'version 2 changed-path used when version 2 requested' ' + ( + cd highbit2 && + test_bloom_filters_used "-- another$CENT" + ) +' + +test_expect_success 'version 2 changed-path not used when version 1 requested' ' + ( + cd highbit2 && + git config --add commitGraph.changedPathsVersion 1 && + test_bloom_filters_not_used "-- another$CENT" + ) +' + +test_expect_success 'version 2 changed-path used when autodetect requested' ' + ( + cd highbit2 && + git config --add commitGraph.changedPathsVersion -1 && + test_bloom_filters_used "-- another$CENT" + ) +' + +test_expect_success 'when writing another commit graph, preserve existing version 2 of changed-path' ' + test_commit -C highbit2 c2double "$CENT$CENT" && + git -C highbit2 commit-graph write --reachable --changed-paths && + ( + cd highbit2 && + git config --add commitGraph.changedPathsVersion -1 && + echo "options: bloom(2,10,7) read_generation_data" >expect && + test-tool read-graph >full && + grep options full >actual && + test_cmp expect actual + ) +' + +test_expect_success 'when writing commit graph, do not reuse changed-path of another version' ' + git init doublewrite && + test_commit -C doublewrite c "$CENT" && + git -C doublewrite config --add commitGraph.changedPathsVersion 1 && + git -C doublewrite commit-graph write --reachable --changed-paths && + for v in -2 3 + do + git -C doublewrite config --add commitGraph.changedPathsVersion $v && + git -C doublewrite commit-graph write --reachable --changed-paths 2>err && + cat >expect <<-EOF && + warning: attempting to write a commit-graph, but ${SQ}commitGraph.changedPathsVersion${SQ} ($v) is not supported + EOF + test_cmp expect err || return 1 + done && + git -C doublewrite config --add commitGraph.changedPathsVersion 2 && + git -C doublewrite commit-graph write --reachable --changed-paths && + ( + cd doublewrite && + echo "c01f" >expect && + get_first_changed_path_filter >actual && + test_cmp expect actual + ) +' + corrupt_graph () { test_when_finished "rm -rf $graph" && git commit-graph write --reachable --changed-paths && -- cgit v1.2.3 From 5421e7c3a119bc869c25e2e3d5692c86bb8aa5d9 Mon Sep 17 00:00:00 2001 From: Taylor Blau Date: Tue, 25 Jun 2024 13:40:11 -0400 Subject: commit-graph: reuse existing Bloom filters where possible MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit In an earlier commit, a bug was described where it's possible for Git to produce non-murmur3 hashes when the platform's "char" type is signed, and there are paths with characters whose highest bit is set (i.e. all characters >= 0x80). That patch allows the caller to control which version of Bloom filters are read and written. However, even on platforms with a signed "char" type, it is possible to reuse existing Bloom filters if and only if there are no changed paths in any commit's first parent tree-diff whose characters have their highest bit set. When this is the case, we can reuse the existing filter without having to compute a new one. This is done by marking trees which are known to have (or not have) any such paths. When a commit's root tree is verified to not have any such paths, we mark it as such and declare that the commit's Bloom filter is reusable. Note that this heuristic only goes in one direction. If neither a commit nor its first parent have any paths in their trees with non-ASCII characters, then we know for certain that a path with non-ASCII characters will not appear in a tree-diff against that commit's first parent. The reverse isn't necessarily true: just because the tree-diff doesn't contain any such paths does not imply that no such paths exist in either tree. So we end up recomputing some Bloom filters that we don't strictly have to (i.e. their bits are the same no matter which version of murmur3 we use). But culling these out is impossible, since we'd have to perform the full tree-diff, which is the same effort as computing the Bloom filter from scratch. But because we can cache our results in each tree's flag bits, we can often avoid recomputing many filters, thereby reducing the time it takes to run $ git commit-graph write --changed-paths --reachable when upgrading from v1 to v2 Bloom filters. To benchmark this, let's generate a commit-graph in linux.git with v1 changed-paths in generation order[^1]: $ git clone git@github.com:torvalds/linux.git $ cd linux $ git commit-graph write --reachable --changed-paths $ graph=".git/objects/info/commit-graph" $ mv $graph{,.bak} Then let's time how long it takes to go from v1 to v2 filters (with and without the upgrade path enabled), resetting the state of the commit-graph each time: $ git config commitGraph.changedPathsVersion 2 $ hyperfine -p 'cp -f $graph.bak $graph' -L v 0,1 \ 'GIT_TEST_UPGRADE_BLOOM_FILTERS={v} git.compile commit-graph write --reachable --changed-paths' On linux.git (where there aren't any non-ASCII paths), the timings indicate that this patch represents a speed-up over recomputing all Bloom filters from scratch: Benchmark 1: GIT_TEST_UPGRADE_BLOOM_FILTERS=0 git.compile commit-graph write --reachable --changed-paths Time (mean ± σ): 124.873 s ± 0.316 s [User: 124.081 s, System: 0.643 s] Range (min … max): 124.621 s … 125.227 s 3 runs Benchmark 2: GIT_TEST_UPGRADE_BLOOM_FILTERS=1 git.compile commit-graph write --reachable --changed-paths Time (mean ± σ): 79.271 s ± 0.163 s [User: 74.611 s, System: 4.521 s] Range (min … max): 79.112 s … 79.437 s 3 runs Summary 'GIT_TEST_UPGRADE_BLOOM_FILTERS=1 git.compile commit-graph write --reachable --changed-paths' ran 1.58 ± 0.01 times faster than 'GIT_TEST_UPGRADE_BLOOM_FILTERS=0 git.compile commit-graph write --reachable --changed-paths' On git.git, we do have some non-ASCII paths, giving us a more modest improvement from 4.163 seconds to 3.348 seconds, for a 1.24x speed-up. On my machine, the stats for git.git are: - 8,285 Bloom filters computed from scratch - 10 Bloom filters generated as empty - 4 Bloom filters generated as truncated due to too many changed paths - 65,114 Bloom filters were reused when transitioning from v1 to v2. [^1]: Note that this is is important, since `--stdin-packs` or `--stdin-commits` orders commits in the commit-graph by their pack position (with `--stdin-packs`) or in the raw input (with `--stdin-commits`). Since we compute Bloom filters in the same order that commits appear in the graph, we must see a commit's (first) parent before we process the commit itself. This is only guaranteed to happen when sorting commits by their generation number. Signed-off-by: Taylor Blau Signed-off-by: Junio C Hamano --- bloom.c | 90 ++++++++++++++++++++++++++++++++++++++++++++++++++-- bloom.h | 1 + commit-graph.c | 5 +++ object.h | 1 + t/t4216-log-bloom.sh | 39 ++++++++++++++++++++++- 5 files changed, 132 insertions(+), 4 deletions(-) (limited to 'commit-graph.c') diff --git a/bloom.c b/bloom.c index 323d8012b8..740c1767ea 100644 --- a/bloom.c +++ b/bloom.c @@ -6,6 +6,9 @@ #include "commit-graph.h" #include "commit.h" #include "commit-slab.h" +#include "tree.h" +#include "tree-walk.h" +#include "config.h" define_commit_slab(bloom_filter_slab, struct bloom_filter); @@ -283,6 +286,73 @@ static void init_truncated_large_filter(struct bloom_filter *filter, filter->version = version; } +#define VISITED (1u<<21) +#define HIGH_BITS (1u<<22) + +static int has_entries_with_high_bit(struct repository *r, struct tree *t) +{ + if (parse_tree(t)) + return 1; + + if (!(t->object.flags & VISITED)) { + struct tree_desc desc; + struct name_entry entry; + + init_tree_desc(&desc, &t->object.oid, t->buffer, t->size); + while (tree_entry(&desc, &entry)) { + size_t i; + for (i = 0; i < entry.pathlen; i++) { + if (entry.path[i] & 0x80) { + t->object.flags |= HIGH_BITS; + goto done; + } + } + + if (S_ISDIR(entry.mode)) { + struct tree *sub = lookup_tree(r, &entry.oid); + if (sub && has_entries_with_high_bit(r, sub)) { + t->object.flags |= HIGH_BITS; + goto done; + } + } + + } + +done: + t->object.flags |= VISITED; + } + + return !!(t->object.flags & HIGH_BITS); +} + +static int commit_tree_has_high_bit_paths(struct repository *r, + struct commit *c) +{ + struct tree *t; + if (repo_parse_commit(r, c)) + return 1; + t = repo_get_commit_tree(r, c); + if (!t) + return 1; + return has_entries_with_high_bit(r, t); +} + +static struct bloom_filter *upgrade_filter(struct repository *r, struct commit *c, + struct bloom_filter *filter, + int hash_version) +{ + struct commit_list *p = c->parents; + if (commit_tree_has_high_bit_paths(r, c)) + return NULL; + + if (p && commit_tree_has_high_bit_paths(r, p->item)) + return NULL; + + filter->version = hash_version; + + return filter; +} + struct bloom_filter *get_bloom_filter(struct repository *r, struct commit *c) { struct bloom_filter *filter; @@ -325,9 +395,23 @@ struct bloom_filter *get_or_compute_bloom_filter(struct repository *r, filter, graph_pos); } - if ((filter->data && filter->len) && - (!settings || settings->hash_version == filter->version)) - return filter; + if (filter->data && filter->len) { + struct bloom_filter *upgrade; + if (!settings || settings->hash_version == filter->version) + return filter; + + /* version mismatch, see if we can upgrade */ + if (compute_if_not_present && + git_env_bool("GIT_TEST_UPGRADE_BLOOM_FILTERS", 1)) { + upgrade = upgrade_filter(r, c, filter, + settings->hash_version); + if (upgrade) { + if (computed) + *computed |= BLOOM_UPGRADED; + return upgrade; + } + } + } if (!compute_if_not_present) return NULL; diff --git a/bloom.h b/bloom.h index bfe389e29c..e3a9b68905 100644 --- a/bloom.h +++ b/bloom.h @@ -102,6 +102,7 @@ enum bloom_filter_computed { BLOOM_COMPUTED = (1 << 1), BLOOM_TRUNC_LARGE = (1 << 2), BLOOM_TRUNC_EMPTY = (1 << 3), + BLOOM_UPGRADED = (1 << 4), }; struct bloom_filter *get_or_compute_bloom_filter(struct repository *r, diff --git a/commit-graph.c b/commit-graph.c index ce4524e2b0..e401e31a78 100644 --- a/commit-graph.c +++ b/commit-graph.c @@ -1165,6 +1165,7 @@ struct write_commit_graph_context { int count_bloom_filter_not_computed; int count_bloom_filter_trunc_empty; int count_bloom_filter_trunc_large; + int count_bloom_filter_upgraded; }; static int write_graph_chunk_fanout(struct hashfile *f, @@ -1772,6 +1773,8 @@ static void trace2_bloom_filter_write_statistics(struct write_commit_graph_conte ctx->count_bloom_filter_trunc_empty); trace2_data_intmax("commit-graph", ctx->r, "filter-trunc-large", ctx->count_bloom_filter_trunc_large); + trace2_data_intmax("commit-graph", ctx->r, "filter-upgraded", + ctx->count_bloom_filter_upgraded); } static void compute_bloom_filters(struct write_commit_graph_context *ctx) @@ -1813,6 +1816,8 @@ static void compute_bloom_filters(struct write_commit_graph_context *ctx) ctx->count_bloom_filter_trunc_empty++; if (computed & BLOOM_TRUNC_LARGE) ctx->count_bloom_filter_trunc_large++; + } else if (computed & BLOOM_UPGRADED) { + ctx->count_bloom_filter_upgraded++; } else if (computed & BLOOM_NOT_COMPUTED) ctx->count_bloom_filter_not_computed++; ctx->total_bloom_filter_data_size += filter diff --git a/object.h b/object.h index db25714b4e..2e5e08725f 100644 --- a/object.h +++ b/object.h @@ -75,6 +75,7 @@ void object_array_init(struct object_array *array); * commit-reach.c: 16-----19 * sha1-name.c: 20 * list-objects-filter.c: 21 + * bloom.c: 2122 * builtin/fsck.c: 0--3 * builtin/gc.c: 0 * builtin/index-pack.c: 2021 diff --git a/t/t4216-log-bloom.sh b/t/t4216-log-bloom.sh index cc6e5733f6..3f163dc396 100755 --- a/t/t4216-log-bloom.sh +++ b/t/t4216-log-bloom.sh @@ -222,6 +222,10 @@ test_filter_trunc_large () { grep "\"key\":\"filter-trunc-large\",\"value\":\"$1\"" $2 } +test_filter_upgraded () { + grep "\"key\":\"filter-upgraded\",\"value\":\"$1\"" $2 +} + test_expect_success 'correctly report changes over limit' ' git init limits && ( @@ -667,7 +671,14 @@ test_expect_success 'when writing another commit graph, preserve existing versio test_expect_success 'when writing commit graph, do not reuse changed-path of another version' ' git init doublewrite && test_commit -C doublewrite c "$CENT" && + git -C doublewrite config --add commitGraph.changedPathsVersion 1 && + >trace2.txt && + GIT_TRACE2_EVENT="$(pwd)/trace2.txt" \ + git -C doublewrite commit-graph write --reachable --changed-paths && + test_filter_computed 1 trace2.txt && + test_filter_upgraded 0 trace2.txt && + git -C doublewrite commit-graph write --reachable --changed-paths && for v in -2 3 do @@ -678,8 +689,14 @@ test_expect_success 'when writing commit graph, do not reuse changed-path of ano EOF test_cmp expect err || return 1 done && + git -C doublewrite config --add commitGraph.changedPathsVersion 2 && - git -C doublewrite commit-graph write --reachable --changed-paths && + >trace2.txt && + GIT_TRACE2_EVENT="$(pwd)/trace2.txt" \ + git -C doublewrite commit-graph write --reachable --changed-paths && + test_filter_computed 1 trace2.txt && + test_filter_upgraded 0 trace2.txt && + ( cd doublewrite && echo "c01f" >expect && @@ -688,6 +705,26 @@ test_expect_success 'when writing commit graph, do not reuse changed-path of ano ) ' +test_expect_success 'when writing commit graph, reuse changed-path of another version where possible' ' + git init upgrade && + + test_commit -C upgrade base no-high-bits && + + git -C upgrade config --add commitGraph.changedPathsVersion 1 && + >trace2.txt && + GIT_TRACE2_EVENT="$(pwd)/trace2.txt" \ + git -C upgrade commit-graph write --reachable --changed-paths && + test_filter_computed 1 trace2.txt && + test_filter_upgraded 0 trace2.txt && + + git -C upgrade config --add commitGraph.changedPathsVersion 2 && + >trace2.txt && + GIT_TRACE2_EVENT="$(pwd)/trace2.txt" \ + git -C upgrade commit-graph write --reachable --changed-paths && + test_filter_computed 0 trace2.txt && + test_filter_upgraded 1 trace2.txt +' + corrupt_graph () { test_when_finished "rm -rf $graph" && git commit-graph write --reachable --changed-paths && -- cgit v1.2.3 From 9c8a9ec787149dc4f4b278d9bd8ad94c96691a5f Mon Sep 17 00:00:00 2001 From: Taylor Blau Date: Tue, 25 Jun 2024 13:40:15 -0400 Subject: bloom: introduce `deinit_bloom_filters()` After we are done using Bloom filters, we do not currently clean up any memory allocated by the commit slab used to store those filters in the first place. Besides the bloom_filter structures themselves, there is mostly nothing to free() in the first place, since in the read-only path all Bloom filter's `data` members point to a memory mapped region in the commit-graph file itself. But when generating Bloom filters from scratch (or initializing truncated filters) we allocate additional memory to store the filter's data. Keep track of when we need to free() this additional chunk of memory by using an extra pointer `to_free`. Most of the time this will be NULL (indicating that we are representing an existing Bloom filter stored in a memory mapped region). When it is non-NULL, free it before discarding the Bloom filters slab. Suggested-by: Jonathan Tan Signed-off-by: Taylor Blau Signed-off-by: Junio C Hamano Signed-off-by: Taylor Blau Signed-off-by: Junio C Hamano --- bloom.c | 16 +++++++++++++++- bloom.h | 3 +++ commit-graph.c | 4 ++++ 3 files changed, 22 insertions(+), 1 deletion(-) (limited to 'commit-graph.c') diff --git a/bloom.c b/bloom.c index 740c1767ea..d080a1b616 100644 --- a/bloom.c +++ b/bloom.c @@ -92,6 +92,7 @@ int load_bloom_filter_from_graph(struct commit_graph *g, sizeof(unsigned char) * start_index + BLOOMDATA_CHUNK_HEADER_SIZE); filter->version = g->bloom_filter_settings->hash_version; + filter->to_free = NULL; return 1; } @@ -264,6 +265,18 @@ void init_bloom_filters(void) init_bloom_filter_slab(&bloom_filters); } +static void free_one_bloom_filter(struct bloom_filter *filter) +{ + if (!filter) + return; + free(filter->to_free); +} + +void deinit_bloom_filters(void) +{ + deep_clear_bloom_filter_slab(&bloom_filters, free_one_bloom_filter); +} + static int pathmap_cmp(const void *hashmap_cmp_fn_data UNUSED, const struct hashmap_entry *eptr, const struct hashmap_entry *entry_or_key, @@ -280,7 +293,7 @@ static int pathmap_cmp(const void *hashmap_cmp_fn_data UNUSED, static void init_truncated_large_filter(struct bloom_filter *filter, int version) { - filter->data = xmalloc(1); + filter->data = filter->to_free = xmalloc(1); filter->data[0] = 0xFF; filter->len = 1; filter->version = version; @@ -482,6 +495,7 @@ struct bloom_filter *get_or_compute_bloom_filter(struct repository *r, filter->len = 1; } CALLOC_ARRAY(filter->data, filter->len); + filter->to_free = filter->data; hashmap_for_each_entry(&pathmap, &iter, e, entry) { struct bloom_key key; diff --git a/bloom.h b/bloom.h index e3a9b68905..d20e64bfbb 100644 --- a/bloom.h +++ b/bloom.h @@ -56,6 +56,8 @@ struct bloom_filter { unsigned char *data; size_t len; int version; + + void *to_free; }; /* @@ -96,6 +98,7 @@ void add_key_to_filter(const struct bloom_key *key, const struct bloom_filter_settings *settings); void init_bloom_filters(void); +void deinit_bloom_filters(void); enum bloom_filter_computed { BLOOM_NOT_COMPUTED = (1 << 0), diff --git a/commit-graph.c b/commit-graph.c index e401e31a78..0de0f38b53 100644 --- a/commit-graph.c +++ b/commit-graph.c @@ -828,6 +828,7 @@ struct bloom_filter_settings *get_bloom_filter_settings(struct repository *r) void close_commit_graph(struct raw_object_store *o) { clear_commit_graph_data_slab(&commit_graph_data_slab); + deinit_bloom_filters(); free_commit_graph(o->commit_graph); o->commit_graph = NULL; } @@ -2646,6 +2647,9 @@ int write_commit_graph(struct object_directory *odb, res = write_commit_graph_file(ctx); + if (ctx->changed_paths) + deinit_bloom_filters(); + if (ctx->split) mark_commit_graphs(ctx); -- cgit v1.2.3