refs: refactor `resolve_gitlink_ref()` to accept a repository

In `resolve_gitlink_ref()` we implicitly rely on `the_repository` to
look up the submodule ref store. Now that we can look up submodule ref
stores for arbitrary repositories we can improve this function to
instead accept a repository as parameter for which we want to resolve
the gitlink.

Do so and adjust callers accordingly.

Signed-off-by: Patrick Steinhardt <ps@pks.im>
Signed-off-by: Junio C Hamano <gitster@pobox.com>

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