tools/mpremote: Make eval parse by default.

This is a step towards making the transport expose a Python API rather than
functions that mostly print to stdout.

Most use cases of `transport.eval()` are to get some state back from the
device, so have it return as a value directly by default.

Updates uses of `transport.eval()` to remove the parse argument where it
now isn't needed, make the `rtc` command use eval/exec, and update the
`mip` command to use eval's parsing.

This work was funded through GitHub Sponsors.

Signed-off-by: Jim Mussared <jim.mussared@gmail.com>

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