tools/mpy-tool.py: Rework .mpy merging feature.

Now that the native qstr link table is gone, merging a native .mpy file
with a bytecode .mpy file is not as simple as concatenating the .mpy data.
The qstr_table and obj_table tables from all merged .mpy files must now be
joined together, because they are global to the .mpy file (and hence global
to the merged .mpy file).  This means the bytecode needs to be be decoded,
qstr_table and obj_table indices updated to point to the correct entries in
the new tables, and then the bytecode re-encoded.

This commit makes this change to the merging feature in mpy-tool.py.  This
can now merge an arbitrary number of bytecode .mpy files, and up to one
native .mpy file.

Signed-off-by: Damien George <damien@micropython.org>

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